Non-spreading pestivirus

ABSTRACT

Vaccines used in the eradication or control of pestivirus infections, particularly those vaccines used in pigs or ruminants. The invention provides nucleic acid, pestivirus-like particles and a pestivirus vaccine, including the nucleic acid or particles, which are capable of eliciting a proper immune response without the ability to spread throughout the vaccinated animal, thereby avoiding the negative consequences of viral spread. Preferably, the immune response allows for serological discrimination between vaccinated animals and wild-type pestivirus infected animals.

CROSS-REFERENCE TO RELATED APPLICATIONS

[0001] This application is a continuation of co-pending International Patent Application No. PCT/NL00/00153 filed on Mar. 8, 2000 designating the U.S.A. (International Publication No. WO 00/53766 published on Sep. 14, 2000), the contents of the entirety of which are incorporated by this reference.

TECHNICAL FIELD

[0002] The invention relates to vaccines used in the eradication or control of pestivirus infections, particularly those used in pigs or ruminants.

BACKGROUND

[0003] The genus Pestivirus of the family Flaviviridae conventionally consists of classical swine fever virus (“CSFV”), Border disease virus (“BDV”), and bovine viral diarrhoea virus (“BVDV”). Genomes of several BVDV, BDV and CSFV strains have been sequenced, individual pestiviral proteins have been expressed and viruses derived from (full-length) DNA copies of the RNA genome of BVDV and CSFV have been generated (Renard et al., 1987 EP application 0208672; Collett et al., 1988, Virology 165, 191-199; Mendez et al, J. Virol. 72:4737-4745, 1988; Deng and Brock, 1992, Virology 1991, 865-679; Meyers et al., 1989,Virology 171, 555-567; Moormann et al., 1990, Virology 177, 184-188; Meyers et al., 1989, EP 89104921; Moormann and Wensvoort, 1989, PCT/NL90/00092; Moormann and Van Rijn; 1994, PCT/NL95/00214; Ridpath et al., 1997, Virus Res. 50: 237-243; Becker et al., 1998, J. Virol. 72:5165-5173,Meyersetal, J. Virol. 70:1588-1595, 1996).

[0004] The pestivirus genome is a positive-stranded RNA molecule of about 12.5 kilobases containing one large open reading frame (“ORF”). The ORF is translated into a hypothetical poly-protein of approximately 4,000 amino acids, which is processed by virus- and cell-encoded proteases. The ORF is flanked by two conserved non-translated regions, which are probably involved in the replication of the genome. The 5′-non-coding region also plays a role in initiation of translation.

[0005] The poly-protein which is co- and post-translationally processed by cellular and viral proteases contains all the viral structural and nonstructural proteins (for review see C. M. Rice: In Fields Virology, Third Edition, 1996 Flaviviridae: The Viruses and their Replication: Chapter 30: pp. 931-959). The viral structural proteins, the capsid protein C and the envelope proteins E^(rns), E1 and E2, are located in the N-terminal part of the polyprotein. The nonstructural proteins among, which the serine protease NS3 and RNA replicase complex NS5A and NS5B, are located in the C-terminal part of the polyprotein.

[0006] Pestiviruses are structurally and antigenically closely related. To date, pestiviruses such as BDV, BVDV and CSFV have been isolated from different species, most notably from ruminants and pigs, but infection of humans has also been reported. All pestiviruses have in common the ability to induce congenital infections of foetuses when a pregnant animal is infected. Such foetal infections occur via transplacental infection if the dam undergoes an acute infection during pregnancy or is persistently infected with a pestivirus (Oirschot, J. T. van Vet. Microbiol. 4:117-132, 1979; Baker J. C., JAVMA 190:1449-1458, 1987; Nettleton P. F. et al., Comp. Immun. Microbiol. Infect. Dis. 15:179-188, 1992, Wensvoort G. and Terpstra C. Res. Vet. Sci. 45:143-148, 1988).

[0007] Currently, modified-live, killed and subunit pestivirus vaccines are available. Live-virus vaccines have the advantage over the other types of vaccines of achieving higher levels of immunity without the need of booster vaccination. However, disadvantages include the ability of vaccinal strains to cross the placenta and induce all known consequences of foetal pestivirus infection (Liess B et al., Zentralblad Veterinarmed. [B] 31:669-681, 1984). Furthermore, modified-live pestivirus vaccines have been reported to cause immunosuppressive effects, probably due to their ability to spread through the vaccinated animal and replicate for several days in lymphocytes and neutrophils, thereby causing leukopenia and horizontal spread (Roth J. A. and Kaeberle M. L., Am. J. Vet. Res. 44:2366-2372, 1983). Furthermore, epizootics of mucosal disease (a consequence of a persistent BVDV infection) and of acute BVDV infections have been reported after vaccination with live-virus vaccines (Lambert G., JAVMA 163:874-876, 1973).

[0008] Thus, despite the fact that live vaccines are generally considered as having best immunological properties, there are distinct down-sides to using a live pestiviral vaccine in the control and eradication of pestivirus infections.

[0009] These downsides are related to the fact that a conventional live pestiviral vaccine, after inoculation of the animal with the vaccine, undergoes several rounds of replication and spreads through the vaccinated animal. For one thing, this may result in the above reported shedding of the virus (horizontal spread), which after all is a normal result of any viral infection, whereby an animal is infected with a virus after which said virus replicates, spreads through the body, may replicate again, and eventually is shed from the infected animal to spread to and infect a second, contact, animal.

[0010] Even more serious, however, are congenital infections with pestiviruses, causing the so called vertical spread. Foetuses get infected when the virus spreads through the body of a pregnant animal and the virus crosses the transplacental barrier. Depending on the time of gestation and the virulence of the infecting virus, several effects can be noticed. Severe effects include the death of embryos or foetuses, malformations, mummification, stillbirth or perinatal death (Liess B, Vol 2 Disease Monographs (E. P. J. Gibss, Editor) Academic Press, London. pp 627-650, 1982). Less virulent virus infections, or infections later in gestation, generally result in the birth of congenitally infected offspring (van Oirschot J. T. in: Classical swine fever and related viral infections B. Liess (ed) Martinus Nijhoff Publishing Boston pp 1-25, 1988), i.e calves, lambs or piglets that are commonly persistently infected for life, often thrive not well, are prone to immunosuppression and (sub)clinical disease (such as mucosal disease with BVDV (Brownlie J Arch. Virol. [Suppl. 3 ]: 73-96, 1991)), and, last but not least, are a continuing source of infection for the rest of the population.

[0011] The invention provides nucleic acid, pestivirus-like particles and a modified-live pestivirus vaccine comprising said nucleic acid or particles which is capable to elicit a proper immune response without having the ability to spread throughout the vaccinated animal, thereby avoiding the negative consequences of viral spread. Preferably said immune response allows for serological discrimination between vaccinated animals and wild-type pestivirus infected animals.

[0012] Viral spread or spread of viral nucleic acid in an inoculated animal could in theory also be prevented by inoculating an animal with a pestiviral defective interfering particle (DI) as for example known from Meyers et al. (J. Virol. 70:1588-1595, 1996) or Kupfermann et al. J. Virol. 70:8175-8181, 1996) if one could obtain the DI particles free from the helper pestivirus required for their replication, which is, for all practical purposes, near impossible. Inoculating the animal with a DI preparation containing the helper virus as well would defeat all the purposes, the helper virus would spread throughout the animal, thereby subjecting it to the undesired pestivirus infection, allowing horizontal and vertical transmission. Serological discrimination is thus also not possible, since antibodies directed against the helper virus would be detected.

[0013] However, even if one succeeded in obtaining the DI particles free of the helper virus, it still would amount to nothing, the pestiviral DI particles contain no nucleic acid that allow it to elicit a proper immune response, since the DI nucleic acid essentially does not contain the nucleic acid encoding for structural proteins or immunodominant parts thereof that are responsible for said proper immune response.

[0014] In a first embodiment, the invention provides a recombinant nucleic acid derived from a pestivirus from which nucleic acid a fragment encoding at least one pestiviral protein or substantial part thereof related to viral spread is functionally deleted, said nucleic acid allowing for RNA replication in a suitable cell and encoding at least one functional structural protein or at least one immunodominant part thereof.

[0015] Functionally deleted herein comprises any insertion, modification or deletion of the viral genome that results in the production (via transcription and translation of the nucleic acid in a cell, preferably a cell suitable for the transcription and translation of said nucleic acid, preferably a cell in a animal to be vaccinated) of an, at least functionally, inactivated viral protein or fragment thereof that in its wild-type state is involved in viral spread, or at least in transmission to, or viral infection of cells. Because of said inactivated protein, even when incorporated into the viral particle comprising said nucleic acid, said functional deletion has disabled said particle to enter or infect a cell which normally, had that protein or functional fragment been functioning properly in the particle, would be infected by the particle. In this way, although the particle may yet still be formed, said particle is no longer infectious for other cells and can thus no longer contribute via the route of infection to the spread or transmission of said particle to another cell, notwithstanding the fact that a cell, once infected, may fuse and/or divide, thereby generating multiple cells comprising said particle.

[0016] Said nucleic acid provided by the invention allows for RNA replication in a suitable cell and encodes at least one functional protective protein or at least one immunodominant part thereof. In a preferred embodiment of the invention the protective protein is a structural protein, in general, the immunodominant parts of structural envelope proteins mount the best immune response of the pestiviral proteins, however, some non-structural proteins, such as NS3, are also capable of mounting a sufficient immune response for some purposes, and can therefor also be included. Thus, although spread through infection has now been prevented, the fact that RNA replication is possible allows for one or more rounds of transcription and translation in said cell of immunologically dominant proteins against which a vaccinated animal mounts an immune response through which it is at least partly protected against the consequences of infection with a wild-type pestivirus. The translated protein(s) or fragment(s) thereof in themselves (is) are responsible for said immune response and may also become part of a virus-like particle, even comprising the replicate RNA, but said particle is not infectious due to the fact that one essential functional feature of the functionally deleted protein is missing.

[0017] Although in one embodiment the nucleic acid as provided by the invention may comprise DNA, as to allow for DNA vaccination, in a another embodiment, the invention provides nucleic acid wherein said nucleic acid is RNA, to allow for RNA vaccination. Such RNA is for example packaged into a virus-like particle in a complementing cell as provided by the invention provided with a functional protein or fragment (derived from said complementing cell) responsible for virus-cell interactions allowing said particle to enter or infect a suitable cell, or may be introduced into the animal's cells otherwise, such as via the intradermal route.

[0018] In a preferred embodiment, the invention provides a nucleic acid wherein said functional deletion is in a fragment encoding an envelope protein. Essential to infection with pestiviruses is the interaction of viral structural proteins with the surface or a receptor of the susceptible cell. It is through this interaction that the infection takes place. Especially envelope proteins E² and/or E^(rns) provide for this interaction, and functionally deleting at least one of these envelope proteins or functional fragments thereof (in particular those fragments involved in receptor or surface interaction) leads to obstruction of infectivity.

[0019] Several examples of such functional deletions in a nucleic acid encoding protein related to viral spread are given in the detailed description of the invention. An example comprises a modification of a cysteine encoding nucleic acid codon, whereby a conformational change is induced in a fragment of a pestiviral protein, preferably an envelope protein, in such a way that said functionally deleted protein, when incorporated in said particle, has disabled said particle to enter an otherwise accessible cell. One example is the modification of a codon resulting in a cysteine change, for example at amino acid position 422, or for that matter at position 381, of the amino acid sequence of the E^(rns) protein of CSFV, or at functionally corresponding locations in the E^(rns) protein of CSFV or other pestiviruses, which, for example obtained by sequence comparison, are also provided by the invention. Another example comprises deleting larger fragments of a nucleic acid encoding a pestiviral protein for example by deleting at least a fragment encoding approximately corresponding positions 170-268 or other functionally related fragments of the capsid proteins C of CSFV or other pestiviruses or by deleting at least a fragment encoding approximately corresponding positions 500-665 or other functionally related fragments of the El proteins of CSFV or other pestiviruses, or comprises deleting fragments encoding etc. etc. Another example comprises deleting larger fragments of a nucleic acid encoding a pestiviral protein, for example by deleting at least a fragment encoding corresponding positions 381, 422, 381-422, 405-436, 422-436, 422-488 or 273-488 or other functionally related fragments of the E^(rns) protein of CSFV or other pestiviruses, or comprises deleting fragments encoding corresponding positions 698-1008 or 689-1062 in the E2 protein of CSFV or other functionally related fragments of the E2 protein of CSFV or other pestiviruses.

[0020] In a much preferred embodiment the invention provides a nucleic acid wherein said functional deletion comprises an immunodominant part of said protein. For example, deleting a fragment corresponding to about amino acid positions 422-436 or 422-488 of the E^(rns) protein, or corresponding to about amino acid positions 693-746, 785-870, 689-870 or 800-864 of the E2 protein or any other fragment related to a discernible immune response against said protein has the additional advantage that a discernible vaccine is provided.

[0021] By deleting said serologically discernible fragment, in the end a marker vaccine is obtained that allows for serological discrimination between vaccinated animals and animals infected with a wild-type pestivirus.

[0022] In constructing a vaccine, one has to take into account what (type of) serological test is preferred once the vaccine is employed in the field. For CSFV it preferably should be genotype specific, which blocks using diagnostic tests based on NS3. However, selecting E2 or E^(rns) as diagnostic antigens hampers developing a vaccine which uses the protective properties of these proteins. The invention surprisingly provides a pestivirus vaccine in which a protein, preferably an envelope protein comprising a specific immunodominant part in general thought responsible for generating protection, has been (functionally) deleted, allowing serological discrimination surprisingly without seriously hampering protective properties.

[0023] Said protective properties are optimally provided by a nucleic acid according to the invention having a fragment encoding a protective protein that is a functional structural protein, more preferably a functional envelope protein or at least one immunodominant part thereof. Most preferred by the invention is a nucleic acid comprising a fragment encoding a functional deletion in one pestiviral envelope protein, for example E2 or E^(rns), respectively, and further comprising a nucleic acid encoding another protective envelope protein, or immunodominant part thereof, for example E^(rns) or E2 or part thereof, respectively.

[0024] In a further embodiment, the invention provides a nucleic acid additionally comprising a non-pestivirus nucleic acid fragment, thereby providing a nucleic acid encoding heterologous protein or fragments thereof. Heterologous protein (fragments) may be used as marker or may be used to elicit a (protective) imuneresponse. Marker sequences are preferably highly antigenic and in one embodiment of the invention preferably derived from a (micro)organism not replicating in animals. They may encode known complete gene products (e.g. capsid or envelope proteins or antigenic parts of gene products (e.g. epitopes). Marker sequences may also encode artificial antigens not normally encountered in nature, or histochemical markers like Escherichia coli β-galactosidase, Drosophila alcohol dehydrogenase, human placental alkaline phosphatase, firefly luciferase and chloramphenicol acetyltransferase. Also provided is a nucleic acid wherein said non-pestivirus fragment is derived from a pathogen encoding one or more protein (fragments) inducing protective immunity against disease caused by the pathogen, such as a fragment derived from parvovirus, coronavirus, porcine respiratory and reproductive syndrome virus, herpesvirus, influenza virus, and numerous other pathogens known in the art. Also provided is a nucleic acid wherein said non-pestivirus fragment is derived from a cytokine inducing immuno-regulating or -stimulating signals when expressed. Numerous cytokines are known in the art, such as interleukines, interferons and tumour necrosis or colony stimulating factors.

[0025] The invention further provides a nucleic acid according to the invention wherein said suitable cell comprises a nucleic acid construct encoding at least said pestiviral protein or substantial part thereof related to viral spread. Such a suitable cell, which is also provided by the invention, comprises a cell comprising a recombinant nucleic acid encoding at least one pestiviral protein or substantial part thereof related to viral spread and allows packaging said pestiviral protein or substantial part thereof in a pestivirus-like particle. Such a packaging or complementing cell according to the invention allows nucleic acid or replicate nucleic acid according to the invention to be part of a pestivirus-like particle, wherein a substantial part of the protein(fragments) composing said particle are derived from translation and transcription in said cell of nucleic acid according to the invention, being complemented with a protein(fragment) related to viral spread derived from said nucleic acid construct that is also expressed in said complementing cell. Such a protein(fragment) can be transiently expressed from a nucleic acid construct, can be expressed from a helper virus, but preferred is a cell according to the invention wherein said pestiviral protein or substantial part thereof related to viral spread is stably, either inducably or constitutively, expressed from for example a self-replicating nucleic acid or from a in the cellular genome integrated nucleic acid.

[0026] The invention also provides a method for obtaining a pestivirus-like particle comprising transfecting such a cell according to the invention with a nucleic acid according to the invention, further comprising allowing said nucleic acid to replicate in said cell, further comprising allowing replicate nucleic acid to be part of a particle comprising at least said pestiviral protein or part thereof derived from said cell, and further comprising harvesting said particle. Such a use of a nucleic acid according to the invention or a cell according to the invention in producing a pestivirus-like particle is provided by the invention. By transfecting said cell with nucleic acid according to the invention, and allowing said nucleic acid to replicate, a replicate RNA of said nucleic acid is packaged in said pestivirus-like particle, said particle also comprising a functional protein or set of proteins related to viral spread, at least partly derived from the nucleic acid construct with which said complementing or packaging cell has also been provided. Likewise, the invention provides a pestivirus-like particle obtainable by a method according to the invention, for example the invention provides a pestivirus-like particle (or a multitude of such particles) comprising nucleic acid derived from a pestivirus from which nucleic acid a fragment encoding at least one pestiviral protein or substantial part thereof related to viral spread is functionally deleted, said nucleic acid allowing for RNA replication in a suitable cell and encoding at least one functional structural protein or at least one immunodominant part of an immunodominant structural protein. Said particle may be derived from one type of pestivirus but can also be a so-called hybrid particle, wherein its genome and part of its constituting protein(fragments) are derived from one type pestivirus, such as BVDV or BDV, but wherein complementing protein(fragments) are derived from another type pestivirus, such as CSFV. Said particle, having been produced in said packaging or complementing cell as provided is in itself infectious, and thus capable to enter a suitable second cell, such as a non-complementing cell capable of being infected with a pestivirus type in general, or such as a susceptible cell in an animal to be vaccinated. When replicating in said second cell (which is non-complementing) a new particle is produced that however lacks the possibilities to infect yet another cell, and is thus unable to spread by infection. Thus, when the particles produced in a complementing cell are used to infect an animal, such as when used in or as a vaccine, the particles will infect suitable cells in the vaccinated animal, from which, however, no new particles that spread by infection to other cells, are generated, thereby demonstrating the requirements of a non-spreading (non-transmissible) vaccine.

[0027] The invention also provides a method for obtaining a non-spreading pestivirus vaccine comprising obtaining a multitude of particles by a method according to the invention and preparing a suspension of said particles in a suitable diluent. Suitable diluents are known in the art and preferably on a watery basis, such as a (buffered) salt solution or (growth)medium. The invention also provides a method for obtaining a non-spreading pestivirus vaccine comprising obtaining a multitude of particles by a method according to the invention and preparing a suspension of said particles in a comprising combining said suspension with an adjuvant. Suitable adjuvants are water-oil emulsions, aluminum salts or other adjuvants known in the art, see for example Vogel F. R. and Powell M. F, A compendium of adjuvants and excipients. In: Vaccine design. (eds) Powell and Newmann, Pharmaceutical Biotechnology Series, Plenum, N.Y. 1994. The invention thus provides a non-spreading-pestivirus vaccine obtainable by a method according to the invention. The invention provides such a vaccine comprising a nucleic acid according to the invention or a pestivirus-like particle according to the invention, for example further comprising an adjuvant. Optimal efficacy of the vaccine is achieved if its nucleic acid is targeted to suitable antigen presenting cells. Replication and translation of the viral RNA in these cells will result in processing of viral antigen for optimal presentation to the immune system.

[0028] In one embodiment of the invention the vaccine consists of pestivirus-like particles produced in a complementing packaging cell which, with or without an adjuvant, are applied to the animal via different routes such as but not limited to intranasal, intramuscular, intradermal or intravenous vaccination, or a combination of routes. In another embodiment of the invention the vaccine consists of essentially naked DNA or RNA according to the invention which, with or without and adjuvant, is preferably applied to the animal via the intradermal route. However, also alternative routes such as but not limited to the intramuscular route are suitable.

[0029] Such a vaccine is provided wherein said nucleic acid is derived from any pestivirus (vaccine) strain from which (full-lenght) cDNA and infectious copies thereof are or can be provided, such as C-strain virus or from another pestivirus such as another vaccine-type or wild-type of a classical swine fever virus, a bovine viral diarrhoea virus or a Border disease virus, or chimeric virus. For simplicities sake the numbering of the C-strain sequence is used herein for all pestivirus sequences. In fact in other pestivirus sequences the numbering of the E^(rns) and the E2 proteins in the (poly)protein may differ slightly due to length differences in the (poly)protein sequences of pestivirus strains. Based on homology, the N and C termini of the E2 or E^(rns) sequence of any pestivirus strain can, however, easily be determined, such as shown by Rumenapf T. et al. J. Virol 67:3288-3294, 1993 or Elbers K. et al J. Virol. 70:4131-4135, 1996.

[0030] The invention also provides a method for controlling and/or eradicating a pestivirus infection comprising vaccinating at least one animal with a vaccine according to the invention. Said vaccination serves to prevent or mitigate a wild-type pestivirus infection which said animal may have or be confronted with due to the presence of wild-type virus in its surroundings. Since no spread or shedding of the vaccine occurs, the vaccinated animal can be safely vaccinated, even when pregnant; no risk of congenital vaccinal infections of its foetus, or shedding of the vaccine from the vaccinated to a non-vaccinated animal is present due to the non-spreading nature of the vaccine.

[0031] Additionally, the invention provides a method for controlling and/or eradicating a pestivirus infection comprising testing an animal vaccinated with a vaccine according to the invention for the presence of antibodies specific for a wild-type pestivirus. In a preferred embodiment, in said method for controlling such a vaccine is used as a marker vaccine. The use of such a marker vaccine as provided by the invention allows serological discrimination between vaccinated and field-virus infected animals, and thereby a controlled elimination of the virus. For serological discrimination of pestivirus genotypes it does not suffice providing protection with a vaccine comprising the protective proteins E2 or E^(rns) but not the NS3 protein and detecting infections with tests based on NS3. NS3 is not genotype specific, at least it does not elicit genotype specific antibodies to allow discrimination between genotypes. Although no objection can be seen at using the tests to diagnose BVDV or BDV infections such diagnostic tests can thus hardly be used in the aftermath of vaccination campaigns against for example CSFV in pigs. Circulating NS3-BDV or NS3-BVDV antibodies will cause a plethora of false-positive results, leading to suspicions of CSFV infections when in fact there aren't any in the pig population tested. Preferably, tests are used detecting antibodies against E2, or serologically discernible fragments thereof, when the functional deletion is in the nucleic acid fragment encoding the E2 protein and the protective protein mainly comprises E^(rns) protective protein or fragments thereof optionally supplemented with other protective protein (fragments); or vice versa, tests are used detecting antibodies against E^(rns), or serologically discernible fragments thereof, when the functional deletion is in the nucleic acid fragment encoding the E^(rns) protein and the protective protein mainly comprises E2 protein or fragments thereof, optionally supplemented with other protective protein (fragments).

[0032] The invention also provides an animal vaccinated with a non-spreading (non-transmissible) pestivirus vaccine according to the invention. Since such an animal bears no risk of spreading the vaccine to contact animals, or to its foetus(es), such an animal has considerable advantages over animals vaccinated with conventional pestivirus vaccines. It can for example be traded during that period shortly after vaccination where trade otherwise has to be restricted due to the risk of shedding.

[0033] The invention is further explained in the detail below without limiting the invention.

EXAMPLE 1

[0034] Construction and characterisation of recombinant CSFV strains Flc22, Flc23, Flc30, Flc31, Flc32, and Flc33

[0035] Materials and Methods

[0036] Cells & viruses

[0037] Swine kidney cells (SK6-M, EP 0 351 901 B1) were grown in Eagle's basal medium containing 5% foetal bovine serum, glutamine (0.3 mg/ml), and the antibiotics penicillin (200 U/ml), streptomycin (0.2 mg/ml), and mycostatin (100 U/ml). Foetal bovine serum was tested for the absence of BVDV and BDV antibodies as described previously (Moormann et al. 1990. Virology 177:184-198).

[0038] Recombinant CSFV strain C viruses Flc22, Flc23, FLc30, Flc31, Flc32, and Flc33 were grown and prepared as described earlier (Moormann et al. 1996. J. Virol. 70: 763-770) with a slight modification, the growth medium of SK6 cells was changed in supplemented Eagle's basal medium. Virus stocks were prepared by passaging the virus eight to ten times on SK6c26 cells. The obtained virus titers ranged from 5.0 to 5.8 TCID₅₀/ml.

[0039] Construction of a stable SK6 cell line expressing E^(rns)

[0040] Plasmid pPRKc16 contains the E2 gene of CSFV strain C under control of the transcription and translation signals of expression vector pEVhisD12. Plasmid pEVhisD12 is a vector that contains promoter/enhancer sequences of the immediate early gene of the human cytomegalovirus followed by a translation initiation codon and the histidinol dehydrogenase gene (hisD) under control of the SV40 early promoter, which can be used as a selective marker (Peeters et. al. 1992, J. Virol. 66: 894-905). The E^(rns) gene of the CSFV strain C was amplified by PCR reaction with primers p974 5′ AAG AAA AGA TCT AAA GCC CTA TTG GCA TGG 3′ and p976 5′ TT GTT ACA GCT GCA TAT GTA CCC TAT TTT GCT TG 3′. After lII digestion, the PCR fragment was ligated into the vector pPRKc16, which was digested with SalI, filled in, and subsequently digested with lII. The resulting plasmid pPRKc26 contains the E^(rns) gene of the CSFV strain C.

[0041] For transfection of SK6 cells with pPRKc26, lipofectamine (20 μg) (Gibco-BRL) was diluted in 50 μl of Optimem-I (Gibco-BRL) mixed with plasmid DNA (1 μg) diluted in 50 μl Optimem-I (Gibco-BRL) and this mixture was allowed to settle for 15 min at room temperature. SK6 cells grown in 10 cm² tissue culture plates were washed with Optimem-I. Fresh Optimem-I was added (0.5 ml), followed by the DNA transfection mixture. After 4 h of incubation at 37° C., the transfection mixture was removed and the wells were supplied with medium containing 5 mM histidinol. After 24 h of incubation at 37° C., cells were trypsinised and plated on a 90 mm²plate. Medium was replaced every 3-4 days. After 15 days single colonies were picked and plated into 2 cm² plates. Expression of E^(rns) was determined by immunostaining of the cells with Mabs C5 (Wensvoort 1989, Thesis, University of Utrecht) directed against E^(rns) of CSFV strain C. A second round of cloning was performed by trypsinising and plating the cells in tenfold dilution in microtiter plates in medium containing 5 mM histidinol. Wells with individual colonies were trypsinised and expression of E^(rns) was determined by immunostaining (Wensvoort et.al. 1988, Vet. Microbiol. 17, 129-140) the cells with Mab C5. The established SK6 cell line constitutively expressing E^(rns) was named SK6c26.

[0042] Characterisation of the stable cell line SK6c26 E^(rns) expression of the cell line SK6c26 line was tested in an immunoperoxidase staining with E^(rns) specific monoclonal antibodies (Mabs) C5, specific for E^(rns) of strain C (Wensvoort 1989, Thesis, University of Utrecht), 140.1 and 137.5 directed against E^(rns) of CSFV strains C and Brescia (de Smit et.al., unpublished data), and a polyclonal rabbit serum, R716 (Hulst et.al. J. Virol. 1998, 72: 151-157). The RNase activity of the E^(rns) expressed in the SK6c26 cell line was measured by a modification of the method of Brown and Ho (Plant Physiol. 1986, 82: 801-806) as described by Hulst et.al. (J. Virol. 1998, 72: 151-157). The amount of E^(rns) was determined by an indirect ELISA based on Mab C5 as coating antibody and horseradish peroxidase conjugated Mab 140.1 as detection antibody as described by Hulst et.al. (J. Virol. 1998, 72: 151-157).

[0043] Construction of recombinant CSFV E^(rns)

[0044] pPRKc5 (Hulst et.al., Virol. 1998, 72: 151-157). is a pEVhisD12 derivative which contains the nucleotide sequence of the autoprotease and structural genes of CSFV strain C, without E^(rns) (N^(pro)-C and E1-E2, amino acids (a.a.) 5-267 and 495-1063 of the amino acid sequence of CSFV strain C) (Moormann et al. 1996. J. Virol. 70: 763-770). A unique Stu I site was introduced in pPRKc5 at the position where E^(rns) was deleted.

[0045] Two complementary oligomers, the forward oligomer p1135 (5′ CCG AAA ATA TAA CTC AAT GGT TTG GCG CTT ATG 3′) and the reverse oligomer p1136 (5′ CAT AAG CGC CAA ACC ATT GAG TTA TAT TTT CGG 3′) were phosphorylated with T4 DNA kinase, hybridized and inserted via ligation in an alkaline phosphatase treated StuI digested vector pPRKc5. This construct was named pPRKc48. This construct harbors the five utmost N-terminal amino acids and the six utmost C-terminal amino acids of E^(rns) (deletion a.a 273-488) (FIG. 1, and FIG. 2A).

[0046] A deletion of amino acids 422 to 488 in E^(rns) of strain C was accomplished by PCR amplification of the E^(rns) gene using the forward primer p974 and reverse primer p1120 5′ GAC GGA TTC GGC ATA GGC GCC AAA CCA TGG GCT CTC TAT AAC TGT AAC 3′. The HA epitope, a.a. sequence YPYDVPDYA (Wilson et.al., Cell 1984, 37, 767-778) was constructed by annealing the 3′ complementary nucleotides of P1124 '5 GAC AGA TCT ATC GAT TAC CCA TAC GAT GTT CCA GAT 3′ and P 1125 5′ GAC GTC GAC GGA TCC AGC GTA ATC TGG AAC ATC 3′ (underlined is the HA sequence) and filling in the 5′ single strand nucleotides in a PCR with Vent polymerase (New England Biolabs). The HA epitope PCR product was digested with ClaI/SalI, and the E^(rns) PCR product was digested with lII/NarI. The two digested PCR products were ligated via a three point ligation into the vector pPRKc16 which was digested with lII and SalI. This resulted in plasmid pPRKc43 containing a recombinant E^(rns) with a deletion of amino acids 422 to 488 with C terminally an HA epitope (FIG. 1 and FIG. 2B). After PCR amplification of plasmid pPRKc43 with the forward primer p935 5′ CCG AAA ATA TAA CTC AAT GG 3′ and the reverse primer p925 5′ CAT AAG CGC CAA ACC AGG TT 3′, the PCR product was phosphorylated with T4 DNA kinase and subsequently ligated into the alkaline phosphatase treated StuI digested vector pPRKc5. The resulting construct harbouring the nucleotide sequence of the autoprotease, the structural proteins of strain C and the recombinant E^(rns) lacking a.a. 422 to 488 was named pPRKc50 (FIG. 2B)

[0047] A deletion mutant lacking amino acids 436 to 488 of E^(rns) of strain C was accomplished by PCR amplification of the E^(rns) gene using the forward primer p974 and reverse primer p1121 5′ GAC GGA TTC GGC ATA GGC GCC AAA CCA ATC CCC ATA CAA GGT ATC CTC 3′. After lII/NarI digestion, the fragment was ligated with the ClaI/SalI digested HA epitope PCR product via a three point ligation in the vector pPRKc16, which was digested with lII/SalI. The resulting plasmid, pPRKc42, was PCR amplified with the forward primer p935 and reverse primer p925. This PCR product was phosphorylated with T4 DNA kinase and subsequently ligated into the alkaline phosphatase treated StuI digested vector pPRKc5. The resulting construct harbouring the nucleotide sequence of the autoprotease, the structural proteins of strain C and the recombinant E^(rns) lacking a.a. 436-488 is named pPRKc49.

[0048] A deletion mutant lacking amino acids 422 to 436 was made by PCR amplification of plasmid pPRKc129 with the primers p1147 5′ CAA ACT GCC GCA CTC ATG TGG GCT CTC TAT AAC TGT 3′ and p925. Then, the obtained PCR product was isolated from agarose gel, and used as reverse primer in a second PCR reaction with primer p935 as forward primer for amplification of pPRKc129. This second PCR product was kinated, and ligated into the alkaline phosphatase treated StuI treated vector pPRKc5, resulting in plasmid pPRKc51.

[0049] A cysteine (CYS) to serine (SER) substitution at a.a. position 422 was constructed by PCR amplification of pPRKc129 with the forward primer p1140 5′ GAG AGC CCT TCG AAT TTC AAT GT 3′ and the reverse primer p925. Further steps were equal to those of the deletion mutant lacking a.a. 422 to 436. Plasmid pPRKc52 contains the autoprotease gene and the structural proteins of strain C, with a mutated E^(rns) containing a CYS-to-SER substitution at pos 422.

[0050] A cysteine to serine mutation at a.a. position 405 was constructed by PCR amplification of pPRKc129 with the forward primer p1148 5′ -CCT GAC CGG TTC GAA GAA AGG GAA-3′ and the reverse primer p925. Further steps were equal to those of the deletion mutant lacking a.a. 422 to 436. Plasmid pPRKc54 contains the autoprotease gene and the structural proteins of strain C, with a mutated E^(rns) containing a CYS-to-SER mutation at pos 405.

[0051] A cysteine to serine substitution at a.a. position 381 was constructed by PCR amplification of pPRKc129 with the forward primer p1149 5′ -TGC GCT GTG ACT AGT AGG TAC GAT AAA-3 ′ and the reverse primer p925. Further steps were equal to those of the deletion mutant lacking a.a. 422 to 436. Plasmid pPRKc56 contains the autoprotease gene and the structural proteins of strain C, with a mutated E^(rns) containing a CYS-to-SER mutation at pos 381.

[0052] Clones in which the mutated E^(rns) gene were inserted in the right orientation were transfected into SK6 cells and tested for expression of E^(rns) and E2 by immunostaining with antibodies against E^(rns) (C5, 140.1, 137.5, R716) and E2 specific Mabs b3 and b4 (Wensvoort 1989, J. Gen. Virol. 70:2865-2876).

[0053] Construction of full-length CSFV constructs harbouring E^(rns) deletion mutants

[0054] A ClaI/NgoMI fragment of pPRKc48 and pPRKc50was isolated and ligated into the ClaI/NgoMI digested vector pPRKflc2, formerly named pPRKflc133 (Moormann et al. 1996. J. Virol. 70: 763-770) and the resulting full-length cDNA CSFV strain C E^(rns) mutants were named pPRKflc23 and pPRKflc22. The complete construction scheme of the full-length constructs pPRKflc22 and pPRKflc23 is depicted in FIGS. 2A and 2B and an overview of the E^(rns) plasmids is given in FIG. 1.

[0055] Similarly, the 422-436 deletion mutant of pPRKc51, and the CYS-to-SER substitutions of pPRKc52, pPRKc54, pPRKc56, were transferred to the vector pPRKflc2 via a ClaI/NgoMI digestion, resulting in the recombinant full-length cDNA clones pPRKflc30, pPRKflc31, pPRKflc32, and pPRKflc33, respectively.

[0056] Isolation of recombinant viruses

[0057] Plasmid DNA from pPRKflc22, pPRKflc23, pPRKflc30, pPRKflc31pPRKflc32, and pPRKflc33 was purified on columns (Qiagen) and linearized with XbaI. The DNA was extracted with phenol-chloroform, precipitated with ethanol, and dissolved in water. RNA was transcribed from the linearized plasmid (1 μg) in a 100 μl reaction volume containing 40 mM TrisHCl (pH 7.5), 6 mM MgCl₂, 2 mM spermidine, 10 mM dithiothreitol, 40 U rRNAsin (Promega), 0.5 mM each rNTP, and 35 U T7 RNA polymerase (Pharmacia). After 1 h incubation at 37° C., 10 U RNase-free DNaseI (Pharmacia) was added and the mixture was incubated for another 15 min. RNA was extracted with phenol-chloroform, precipitated with ethanol, and dissolved in 10 μl water.

[0058] For RNA transfection, 10 g Lipofectin was diluted in 50 μl of Optimem-I. After a 45 min. incubation at room temperature, 1 μg RNA diluted in 50 μl Optimem-I was added and incubated for an additional 15 min. SK6c26 cells grown in 10 cm² tissue culture plates were washed with Optimem-I and incubated with the RNA transfection mixture for 4 h at 37° C. Then, the wells were supplied with fresh medium and incubated for 4 days at 37° C. RNA transfection was performed in duplicate. One sample was immunostained with Mabs b3/b4 specific for E2. When the E2 immunostaining proved to be negative, the duplicate sample was passaged and split into two samples. One of these samples was used for immunostaining four days after passaging. From wells in which E2 expression was observed, supernatant was applied onto fresh SK6c26 or SK6 cells to determine the presence of infectious virus. After four days, the monolayers were fixed and immunostained as described above.

[0059] Growth kinetics of Flc22 and Flc23

[0060] Growth kinetics of the viruses was determined in SK6c26 cells. Subconfluent monolayers in M24 wells were infected at a multiplicity of infection of 0.1. Viruses were adsorbed for 1.5 h. Before cells were supplied with fresh medium, the first sample at time point zero was collected. At 0,1,2,3,4,5,6, and 7 days after infection the M24 plates were freeze/thawed twice and clarified by centrifugation for 10 min at 5000×g at 4° C. Virus titers (log TCID₅₀ per milliliter) of total lysates (cell lysates plus supernatant) were determined on SK6c26 cells.

[0061] Characterisation of recombinant E^(rns) viruses

[0062] The E^(rns) genes of Flc22, and Flc23 were sequenced. Therefore, cytoplasmic RNA of SK6c26 cells infected with these respective viruses was isolated using the RNeasy total RNA isolation kit (Qiagen). DNA fragments covering the E^(rns) genes were analyzed by RT-PCR using primers p1154 5′ GTT ACC AGT TGT TCT GAT GAT 3′ and p305 5′ GGG GTG CAG TTG TTG TAT CCA 3′ amplifying nucleotide sequences 865 to 1920, analyzed on a 1.5% agarose gel in 1×TAE, and purified on Costar Spin-X columns. An RT-PCR of the E2 gene was performed with primer pair p307 TGG AAT GTT GGC AAA TAT GT and p304 CAC TTA CCT AT[A,G] GGG TAG TGT GG amplifying nucleotide position 2200-3174.

[0063] Sequences of the purified PCR fragments were determined by PCR cycle sequencing using the Big dye dRhodamine terminator ready reaction cycle sequencing kit (PE) according to the manufacturers conditions with flanking primers and analyzed on a 310 ABI PRISM genetic analyser.

[0064] In addition, the recombinant viruses were characterised by an immunoperoxidase monolayer assay. For this, SK6 cells were infected with the recombinant viruses and Flc2. After incubation for 4 days at 37° C., monolayers were immunostained with Mabs specific for CSFV E2 (Mabs b3/b4), CSFV EsMabs 140.1, C5, 137.5 and a polyclonal rabbit serum against E^(rns) R716.

[0065] Virus neutralisation index (log reduction of virus titer [TCID₅₀/ml] by neutralising serum) was determined at a 1:250 dilution of serum 716 specifically directed against E^(rns) of CSFV strain C and at a 1: 1000 dilution of a pig serum 539 specifically directed against E2 of CSFV strain Brescia (Hulst et.al., Virol. 1998, 72: 151-157). The virus stocks of Flc2, Flc22 and Flc23 were titrated by endpoint dilution in the presence or absence of these CSFV neutralising antibodies.

[0066] RESULTS

[0067] Transient expression of recombinant E^(rns) in SK6 cells.

[0068] Previous studies showed that the antibodies raised against CSFV E^(rns) do not inhibit RNase activity (Hulst et.al. 1998, J. Virol. 72:151-157).The active domains of the E^(rns) RNase are located in the N-terminal half of the protein (Schneider et.al. 1993, Science 261: 1169-1711, Hulst et.al. 1994 Virol. 200: 558-565) (See FIG. 1 for a schematic representation of E^(rns)). Pepscan analysis did not reveal any linear epitopes on E^(rns) for the antibodies C5, 140.1 and 137.5 (data not shown), showing that the epitopes are conformational. Therefore, a set of E^(rns) recombinants were constructed with deletions of different lengths in the C-terminus (FIG. 1). These deletion mutants were constructed in an expression plasmid pPRKc5 harbouring the nucleotide sequence of the autoprotease and the structural genes (N^(pro)-capsid-E1-E2) without E^(rns). Expression of these constructs enabled us to use the E2 gene as control for a correct open reading frame since the E2 gene is located C-terminally of the E^(rns) gene. SK6 cells were transfected with these plasmids and an immunoperoxidase staining was performed 24 hours after transfection (Table 1).

[0069] Cells transfected with the plasmid pPRKc49, harbouring a deletion from a.a. position 436 to 488, can be specifically immunostained with all antibodies recognising CSFV E^(rns) (Mab C5, 140.1, 137.5) and the polyclonal serum R716, like the wild type plasmid pPRK83. Plasmid pPRKc50however, harbouring a deletion from position 422 to 488, is not recognised anymore by the antibodies against E^(rns), but is positive with Mabs b3/b4 against E2. These results show the presence of a distinct antigenic domain on E^(rns) and/or an important role for a.a. 422 to 436 for either binding or conformation of the epitopes on E^(rns). This region contains a cysteine on position 422 which might be involved in the conformational structure of E^(rns).

[0070] To investigate the role of this region, plasmid pPRKc51harbouring the small deletion of a.a. 422-436 was constructed. As is shown in Table 1, immunoperoxidase staining of the transfected cells showed only Mab binding to E2, and not to E^(rns). These results showed the importance of this region for the conformation of these E^(rns) epitopes.

[0071] Establishment of a SK6 cell line expressing CSFV E^(rns)

[0072] SK6 cells were transfected with plasmid pPRKc26 harbouring the CSFV strain C E^(rns) gene and the histidinol (hisD) resistance gene. After 3 weeks, colonies surviving 5 mM histidinol selection were screened for the expression of E^(rns) by immunostaining the cells with Mab C5 specific for CSFV E^(rns). Positive cells were cloned once again to ensure clonality.

[0073] One of the clones obtained showed expression of E^(rns) in more than 95% of the cells and this clone was named SK6c26. This cell line produced substantially higher amounts of E^(rns) than the five other clones obtained, as was determined by immunostaining. Continuous passaging of this cell line SK6c26 in the presence of 5 mM histidinol retained persistent expression in more than 95% of the cells for at least 10 months (46 passages). Passaging in the absence of histidinol for 10 passages resulted in a slight decline of E^(rns) expressing cells to approximately 80%.

[0074] The stable cell line was further characterised with respect to the biochemical characteristics of produced E^(rns). The SK6c26 cell line reacted in an IPMA with all tested E^(rns) antibodies (Table 2A). The amount of E^(rns) in the cell lysates of SK6c26 and SK6 cells infected with Flc2 was determined by an indirect ELISA and extrapolated from a standard curve prepared from an immuno-affinity purified preparation of E^(rns), prepared in insect cells.

[0075] Lysates of SK6c26 cells reacted with the E^(rns) specific Mab and polyclonal antibodies in an indirect ELISA like the wild type E^(rns) (Table 2B). The amount of E^(rns) produced in the SK6c26 cells (10 ng per cm²) was 3-fold lower than SK6 cells infected with Flc2 (30 ng per cm²). The SK6c26 cells and the Flc2 infected SK6 cells possessed comparable RNase activity as measured by an antigen capture RNase assay (Table 2B). The E^(rns) protein of the stable cell line had a similar mobility as the wild type E^(rns) as determined by SDS-PAGE and was efficiently dimerised like the E^(rns) found in virions (Thiel et.al. 1991, J. Virol. 65:4705-4712) (Table 2B)

[0076] Construction and recovery of C strain CSFV E^(rns) recombinant viruses Flc22 and Flc23.

[0077] Two recombinants of the E^(rns) gene were replaced in pPRKflc2, the full-length infectious copy of the CSFV strain C (Moormann et al. 1996. J. Virol. 70: 763-770). Full-length clone pPRKflc22 is derived from pPRKc50which possessed a deletion of a.a. 422 to 488 in E^(rns) (FIG. 1) The full-length clone pPRKflc23 is derived from pPRKc48 and harbors the five utmost N-terminal amino acids and the six utmost C-terminal amino acids of E^(rns) (deletion of a.a. 273- 488) (FIG. 1). FIG. 2 shows a schematic representation of the construction of these recombinant E^(rns) full-length clones.

[0078] RNA transcribed from the linearized full-length cDNA, was transfected into the SK6 cell line expressing E^(rns). Four days after transfection, immunoperoxidase staining of the monolayer with Mab b3 did not show E2 expression, even with RNA transcribed from pPRKflc2. The amount of E2 protein of the recombinant virus might be too low to detect by immunostaining. Therefore, the cells were passaged to obtain higher titers of viruses. One passage after transfection, wild type virus Flc2 was obtained, while four passages after transfection, expression of E2 could be detected with the recombinant clones pPRKflc22 and pPRKflc23. Three to five additional passages were required to obtain a virus titer of approximately 5.5 TCID₅₀/ml and this stock was used for further characterisation of the viruses, which were named Flc22 and Flc23 for the clones pPRKflc22 and pPRKflc23, respectively.

[0079] Supernatants from SK6c26 cells infected with Flc22 and Flc23 were used for infection of SK6c26 and SK6 cells. Four days after infection, for both viruses, approximately 50-70% of the SK6c26 cells were positive by E2 immunoperoxidase staining, whereas infection on SK6 cells resulted in only single cells or pairs of single cells expressing E2. Taking into account that cells infected with CSFV divide normally (once in 24 h), the number of positive cells observed on SK6c26 cells indicated replication and secondary spread of the mutated virus. Since only single cells or pairs of single cells expressed E2 in the SK6 cells, this indicates that supernatants derived from the SK6c26 cells contain infectious virus which can infect and replicate in SK6 cells but that there is no cell-to-cell spread or secondary infection of the mutated viruses in these cells.

[0080] Supernatant or cell lysates of SK6 cells infected with Flc22 and Flc23 were used for infection of new SK6 and SK6c26 cells, but this also did not lead to infected cells. For the infection of pestiviruses, the interaction of the viral envelope proteins E2 and E^(rns) with the cellular surface are considered to be essential. Due to the absence of E^(rns) in the SK6 cells no infectious particles could be formed from the viruses Flc22 and Flc23.

[0081] Thus, the supernatants of the infected SK6 cells did not contain infectious virus (FIG. 3), whereas supernatant of SK6c26 infected cells with Flc22 and Flc23 can infect SK6 and SK6c26 cells, and thus contained infectious virus.

[0082] SK6 cells infected with Flc22 and Flc23 derived from the supernatants of the SK6c26 cells could be immunostained with Mabs directed against E2, but no positive cells were found with antibodies against E^(rns) (Mabs CS and R716) . As control, infection of SK6 cells with supernatant of SK6c26 cells infected with Flc2 resulted in a positive immunoperoxidase staining for both E2 and E^(rns) and secondary infection (FIG. 3).

[0083] Transfection of linearized full-length cDNAs pPRKflc22 and pPRKflc23 into an SK6-cell line constitutively expressing the bacteriophage T7 RNA polymerase in the cytoplasm of the cell (Van Gennip 1999, J. Virol. Methods, accepted for publication), resulted in transient expression of E2 after transfection, but passaging the transfected cells six times did not result in the recovery of infectious recombinant viruses (data not shown).

[0084] Taken together, these results show that the recombinant E^(rns) mutant viruses Flc22 and Flc23 require complementation of E^(rns) by the complementing cell line for packaging of the recombinant virus genome to yield infectious virus.

[0085] Characterisation of recombinant CSFV viruses Flc22 and Flc23

[0086] To confirm the presence of the mutations in the genomes of Flc22 and Flc23, cellular RNA from infected SK6c26 cells was analyzed with RT-PCR with CSFV specific primers. The fragments, after RT-PCR with primers flanking the E^(rns) gene were of the expected sizes of approximately 857, 401, and 1055, respectively for Flc22, Flc23, and Flc2, whereas the RT-PCR product of the E2 gene was for all viruses of the expected size of 974 bp. (FIG. 4). The amplification products of the E^(rns) gene were sequenced, and the obtained sequences were as expected. No reversion to the wild type or recombination with the E^(rns) gene encoded by the cell line was observed.

[0087] Growth kinetics of Flc22 and Flc23, and the wild type Flc2 were determined on the complementing cell line SK6c26. As shown in FIG. 5, the multi-step growth curve of the recombinant viruses Flc22 and Flc23 were very similar, but showed a slower growth compared to the parent virus Flc2. Titres between 5.0-5.8 TCID₅₀/ml were reached by the recombinant viruses after 6 days, whereas the parent strain Flc2 reached this titer already within 3 days. The observed titer obtained for Flc2 on 4 days after infection in the complementing cell line is ten-fold lower than obtained on the parental cell line SK6 (6.8 TCID₅₀/ml).

[0088] Experiments were conducted to determine whether E^(rns) was incorporated into the viral envelope. Therefore, virus stocks of Flc2, Flc22 and Flc23 were titrated in the presence of CSFV neutralising antibodies. Table 3 shows the reduction of virus titer by incubation with neutralising antibodies. All recombinant viruses were neutralised to the same extent as the parent virus Flc2 with both the E^(rns)-specific and E2-specific neutralising polyclonal antibodies. E^(rns) on the viral envelope of Flc22 could be derived from the complementing cell line as well as from the recombinant E^(rns) protein encoded by the viral genome. But the recombinant E^(rns) of Flc22 is not recognised by the polyclonal serum R716 (FIG. 3) used for neutralising the viruses. Thus, the similar neutralisation index obtained with this polyclonal serum, shows that the amount of E^(rns) derived from the complementing cell line in the viral envelopes of Flc22 was comparable with those of Flc2 and Flc23.

[0089]FIG. 6 shows the amino acid sequence of Flc22 and Flc23 in comparison with Flc2. Flc23 is an E^(rns) deletion mutant in which the cleavage site between C-E^(rns) and as well as E^(rns) -E1 were left intact, the presence of these cleavage sites might influence viability of this virus.

[0090] Construction of pPRKflc30, pPRKflc31, pPRKflc32, and pPRKflc33

[0091] The results of Table 1 show an important role for the amino acid region 422-436 for the conformation of the epitopes of our E^(rns) antibodies. This region contains on position 422 a cysteine, which might be responsible for epitope recognition. To study the role of this region, we constructed a set recombinant E^(rns) full-length clones: one lacking a.a. 422-436 (pPRKflc30), a cysteine-to-serine mutant on position 422 (pPRKflc30), and two additional cysteine-to-serine mutants on positions 405 and 381 (pPRKflc32 and pPRKflc33, respectively) (FIG. 1).

[0092] RNA transcribed from the linearized full-length cDNAs, was transfected into the SK6c26 cell line. The cells became positive after immunostaining with Mab b3 after passaging the transfected cells. Then, the cells were passaged five times to obtain higher titers of viruses.

[0093] Characterisation of recombinant CSFV viruses Flc30, Flc31, Flc32 and Flc33

[0094] Supernatants from SK6c26 cells infected with Flc30, Flc31, Flc32 and Flc33 were used for infection of SK6c26 and SK6 cells. For all viruses approximately 30-50% of the SK6c26 cells were positive by E2 immunoperoxidase staining, four days after infection. For Flc30, Flc31and Flc33; infection on SK6 cells resulted in only single cells or pairs of single cells expressing E2 and no expression of E^(rns) (FIG. 3). This indicates that infection and replication occurred in the SK6 cells, but that there is no cell-to-cell spread or secondary infection of the mutant viruses.

[0095] Supernatant of SK6 cells infected with Flc30, Flc31, or Flc33 was used for infection of new SKG and SK6c26cells, but this did not result in infected cells. Thus, the supernatants of these infected SK6 cells did not contain infectious virus (FIG. 3). For the infection of pestiviruses, the interaction of the viral envelope proteins E2 and E^(rns) with the cellular surface are considered to be essential. Due to the absence of E^(rns) in the SK6 cells, no infectious particles could be formed from the viruses Flc30, Flc31, and Flc33.

[0096] In contrast, infection with Flc32 derived from supernatants of infected SK6c26 cells, showed that 30%-50% of the SK6 cells were infected. Both E2 and E^(rns) could be detected by the E2 and E^(rns) antibodies (FIG. 3). Supernatant of SK6 cells infected with Flc32 can infect new SK6 and SK6c26 cells and thus contains infectious virus (FIG. 3).

[0097] This indicated that virus Flc32 is capable to replicate in and to infect SK6 cells. Thus, the recombinant virus with a 405 ^(CYS-SER) (Flc32) substitution yields infectious virus, whereas the recombinant viruses with CYS-SER substitutions on position 422 (Flc31) and 381 (Flc33), and a deletion of a.a. 422-436 (Flc30) did not.

[0098] These results show an important role for the cysteines at position 422 and 381 for functional activity of E^(rns) as cell-to-cell spread, infectivity, and epitope recognition.

[0099] pPRKflc23 for the expression of heterologous proteins

[0100] pPRKflc23 can be used as vector to incorporate heterologous proteins or fragments of proteins, since the cleavage sites between C-E^(rns) as well as between E^(rns)-E1 were left intact. FIG. 7 shows a schematic representation of pPRKflc23 harbouring the HA epitope, a non-pestivirus sequence. The HA epitope is flanked by the 5 utmost N-terminal a.a. and 6 utmost C-terminal a.a. of E^(rns).

EXAMPLE 2

[0101] Construction and characterisation of recombinant CSFV strains Flc4 and Flc47

[0102] Materials and Methods

[0103] Cells & viruses

[0104] Swine kidney cells (SK6-M, EP 0 351 901 BI) were grown in Eagle's basal medium containing 5% foetal bovine serum, glutamine (0.3 mg/ml), and the antibiotics penicillin (200 U/ml), streptomycin (0.2 mg/ml), and mycostatin (100 U/ml). Foetal bovine serum was tested for the absence of BVDV and BDV antibodies as described previously (Moormann et al. 1990. Virology 177:184-198).

[0105] Recombinant CSFV strain C viruses Flc4 and Flc47 were grown and prepared as described earlier (Moormann et al. 1996. J. Virol. 70: 763-770) with a slight modification, the growth medium of SK6 cells was changed in supplemented Eagle's basal medium. Virus stocks were prepared by passaging the virus five to ten times on SK6b2 cells. The obtained virus titers ranged from 3.5-4.5 TCID₅₀/ml.

[0106] Construction of a stable SK6 cell line expressing E2

[0107] Plasmid pPRb2 contains the E2 gene of CSFV strain Brescia under control of the transcriptional and translation signals of expression vector pEVhisDl2 (van Rijn et al., 1992, Vet. Microbiol. 33: 221-230). Plasmid pEVhisDl2 is a vector that contains promoter/enhancer sequences of the immediate early gene of the human cytomegalovirus followed by a translation initiation codon and the histidinol dehydrogenase gene (hisD) under control of the SV40 early promoter, which can be used as a selective marker (Peeters et.al. 1992, J. Virol. 66: 894-905).

[0108] For transfection of SK6 cells with pPRb2, lipofectamine (20 μg) (Gibco-BRL) was diluted in 50 μl of Optimem-I (Gibco-BRL) mixed with plasmid DNA (1 μg) diluted in 50 μl Optimem-I (Gibco-BRL) and this mixture was allowed to settle for 15 min at room temperature. SK6 cells grown in 10 cm² tissue culture plates were washed with Optimem-I. Fresh Optimem-I was added (0.5 ml), followed by the DNA transfection mixture. After 20 h of incubation at 37° C., transfected cells were trypsinised and replated in a ten-fold dilution in microtiter plates in medium containing 10 mM histidinol. Medium was replaced every 3-4 days until single colonies were visible. Wells with individual colonies were recloned by limited dilution. Expression of E2 was determined by immunostaining of the cells with Mabs b3 and b4 (Wensvoort et al., 1986, Vet. Microbial. 21: 9-20) directed against conserved epitopes of CSFV E2.

[0109] Characterisation of the stable cell line SK6b2

[0110] E2 expression of the cell line SK6b2 line was tested in an immunoperoxidase staining with E2 specific monoclonal antibodies (Mabs) b3 and b4, (Wensvoort et al., 1986, Vet. S Microbiol. 21: 9-20) directed against conserved domain A of CSFV E2 and Mabs b6 and b8 (Wensvoort et al., 1986, Vet. Microbiol. 21: 9-20) directed against domain B and C of Brescia E2.

[0111] The amount of E2 was determined by a Ceditest ELISA based on Mab b3 as coating antibody and horseradish peroxidase conjugated Mab b8 as detection antibody as described by Colijn et.al. (Vet. Microbiol. 59: 15-25, 1997).

[0112] Construction of full-length CSFV constructs harbouring E2 deletion mutants

[0113] Plasmid pPRKflc4 is a full-length plasmid harbouring a deletion of domain B/C in CSFV-E2 from amino acids 693-746 (FIG. 8A). Therefore, the E2 gene harbouring the deletion from plasmid pPAb16 (van Rijn et al. , 1996, J. Gen. Virol. 77: 2737-2745) was inserted in pPRc129 (Moormann et al. 1996. J. Virol. 70: 763-770) by NgoMI/lII ligation, resulting in plasmid pPRc144. The ClaI/NcoI fragment of pPRc144 was isolated and ligated into the ClaI/NcoI digested vector pPRKflc2, formally named pPRKflc133 (Moormann et al. 1996. J. Virol. 70: 763-770), which resulted in full-length clone named pPRKflc4.

[0114] Plasmid pPRKflc47 is a full-length plasmid harbouring a deletion of the complete CSFV-E2 gene from amino acids 689-1062 (FIG. 8B). Therefore, a PCR fragment harbouring the deletion was amplified from plasmid pPRKflc2 with forward primer D1195 (5′-GGC.TGT.TAC.TAG.TAA.CTG.GGG.CAC.AAG.GCT.TAC.CAT.TGG.GCC.AGG.GT G-3′) at position 2412 of the nucleotide sequence of the C-strain and reverse primer p403 (5′-CCC.GGG.ATC.CTC.CTC.CAG.TTT.TTT.GTA.AGT.GGA-3′) at nucleotide position 5560. The SpeI/AflII fragment was isolated and ligated in SpeI/AflII digested pPRc144, resulting in plasmid pPRKc58. The ClaI/NcoI fragment of pPRKc58 was isolated and ligated into the ClaI/NcoI digested vector pPRKflc2, which resulted in full-length clone named pPRKflc47.

[0115] Isolation of recombinant viruses Flc4 and Flc47

[0116] Plasmid DNA from pPRKflc4 and pPRKflc47 was purified on columns (Qiagen) and linearized with XbaI. The DNA was extracted with phenol-chloroform, precipitated with ethanol, and dissolved in water. RNA was transcribed from the linearized plasmid (1 μg) in a 100 μl reaction volume containing 40 mM TrisHCl (pH 7.5), 6 mM MgCl₂, 2 mM spermidine, 10 mM dithiothreitol, 40 U rRNAsin (Promega), 0.5 mM each rNTP, and 35 U T7 RNA polymerase (Pharmacia). After 1 h incubation at 37° C., 10 U RNase-free DNaseI (Pharmacia) was added and the mixture was incubated for another 15 min. RNA was extracted with phenol-chloroform, precipitated with ethanol, and dissolved in 10 μl water.

[0117] For RNA transfection 10 μg Lipofectin was diluted in 50 μl of Optimem-I. After a 45 min. incubation at room temperature, 1 g RNA diluted in 50 μl Optimem-I was added and incubated for an additional 15 min. SK6b2 cells grown in 10 cm² tissue culture plates were washed with Optimem-I and incubated with the RNA transfection mixture for 4 h at 37° C. Then, the wells were supplied with fresh medium and incubated for 4 days at 37° C. RNA transfection was performed in duplicate. One sample was immunostained with Mab C5 (Wensvoort 1998, Thesis, University of Utrecht) specific for C strain E^(rns). When the E^(rns) immunostaining proved to be positive, the duplicate sample was passaged and split into two samples. One of these samples was used for immunostaining four days after passaging. From wells in which E^(rns) expression was observed, supernatant was applied onto fresh SK6 cells to determine the presence of infectious virus. After four days, the monolayers were fixed and immunostained as described above.

[0118] Characterisation of Flc4 and Flc47

[0119] Viruses were characterised by an immunoperoxidase monolayer assay. For this, SK6 cells were infected with viruses Flc2, Flc4 and Flc47. After incubation for 4 days at 37° C., monolayers were immunostained with Mabs specific for CSFV E2 (Mabs b3/b4) and CSFV E^(rns) Mab C5.

RESULTS

[0120] Establishment of a SK6 cell line expressing CSFV E2

[0121] SK6 cells were transfected with plasmid pPRb2 containing the CSFV strain Brescia E2 gene and the histidinol (hisD) resistance gene. After 2 weeks, colonies surviving 10 mM histidinol selection were recloned by limited dilution and screened for the expression of E2 by immunostaining the cells with Mab b3 specific for CSFV E2. This clone was named SK6b2. The biochemical properties of the produced E2 of the SK6b2 cell line were characterised. SK6b2 cells reacted with the E2 specific Mabs in an immunoperoxidase assay (Table 4A) and in an indirect ELISA like wild type E2 (Table 4B). The amount of E2 in the cell lysates of SK6b2 and SK6 cells infected with Flc2 was determined by an indirect ELISA and extrapolated from a standard curve prepared from an immuno-affinity purified preparation of E2 prepared in insect cells. The amount of E2 determined in the SK6b2 cell line (115 ng per cm²) was 3-fold higher than that of SK6 cells infected with Flc2 (30 ng per cm²) The E2 protein of the stable cell line had a similar mobility as the wild type E2 as determined by SDS-PAGE and was efficiently dimerised like the E2 found in virions (Thiel et.al. 1991, J. Virol. 65:4705-4712) (Table 4B).

[0122] Construction and recovery of C strain CSFV E2 recombinant viruses.

[0123] Previous studies have shown that E2 consists of the two antigenic units A and B/C and that the separate antigenic units of E2 can protect pigs against classical swine fever (van Rijn et al., 1996, J. Gen. Virol. 77: 2737-2745). Therefore, two deletion mutants were constructed: plasmid pPRKflc4, which possesses a deletion in E2 of domain B/C between amino acids 693-746 and pPRKflc47, in which the entire E2 gene between amino acids 689-1062 was deleted. FIG. 8 shows a schematic representation of the construction of these recombinant E2 full-length clones.

[0124] RNA transcribed from the linearized full-length cDNA, was transfected into the SK6b2 cell line expressing E2. The cells were positive after immunostaining with Mab C5. Then, the transfected cells were passaged to obtain higher titers of viruses. Supernatants isolated from serial passages contained infectious viruses. Between five to ten passages were required to obtain a virus titer of approximately 3.5-4.5 TCID⁵⁰/ml and this stock was used for further characterisation of the viruses.

[0125] Characterisation of recombinant E2 CSFV viruses

[0126] Supernatants from the SK6b2 cells were used for infection of SK6 and SK6b2 cells to characterize Flc4 and Flc47. Four days after infection, approximately 30-50% of the SKGb2 cells were positive by E^(rns) immunoperoxidase staining.

[0127] Infection on SK6 cells resulted in only single cells or pairs of single cells expressing E^(rns) four days after infection. This indicates that infection and replication occurred in the SK6 cells, but that there is no cell-to-cell spread or secondary infection of the recombinant viruses.

[0128] Supernatant of the Flc4 and Plc47 infected SK6 cells were used for infection of new SK6 and SK6b2 cells, but this did not result into infected cells. Thus, the supernatants of these infected SK6 cells does not contain infectious virus (Table 5). For the infection of pestiviruses, the interaction of the viral envelope proteins E2 and E^(rns) with the cell surface are considered to be essential. Due to the absence of E2 in the SK6 cells, no infectious particles could be formed. Infection of SK6 cells with Flc2 from infected SK6b2 cells resulted in a positive immunoperoxidase staining for E2 and E^(rns) and in secondary infection of the virus.

[0129] SK6 cells infected with the viruses Flc4 and Flc47 could be immunostained with Mab C5 directed against E^(rns), whereas only Flc4 and Flc2 reacted with Mab b3, directed against the A domain of CSFV E2 (Table 5). As expected, Flc47 was completely negative for the Mabs against the A, B and C domains (Table 5).

[0130] Transfection of in vitro RNA derived from pPRKflc4 and pPRKflc47 into the SK6-cell line resulted in transient expression of E^(rns), but passaging the transfected cells six times did not result in the recovery of recombinant viruses. This indicated that the recombinant E2 viruses Flc4 and Flc47 require complementation of E2 to obtain infectious virus.

EXAMPLE 3 (Animal Experiment: 298-47042-00/98-06)

[0131] Pigs vaccinated with Flc22 and Flc23 are protected against a lethal challenge with virulent CSFV strain Brescia

[0132] Materials and methods

[0133] Animals

[0134] Pigs of 6-7 weeks of age from conventional sows were obtained. Pigs were randomly divided in groups, and housed in separate stables of the high containment facilities of ID-DLO. The animals were fed once a day, in a trough, with complete food pellets, and could drink water from a nipple ad libitum.

[0135] Vaccination and challenge

[0136] The pigs were divided into two groups of 2 pigs. The pigs in group A were vaccinated with strain Flc23; the pigs in group B were vaccinated with strain Flc22. The pigs were vaccinated via several routes of inoculation. The pigs were sedated and placed on their backs before inoculation with a virus suspension (2 ml containing 10⁵ TCID₅₀/ml) which was instilled dropwise into the nostrils. In addition, two milliliters of virus suspension was inoculated intravenously, 2 ml of virus was inoculated intradermally. The vaccines were emulsified in a water-oil-water adjuvant (Hulst et al., 1993. J. Virol. 67:5435-5442), and 2 ml of this vaccin was inoculated intramuscularly in the neck behind the ears. In total each pig received 8 ml of vaccine, corresponding with 8×10⁵ TCID₅₀/ml. The pigs were challenged intranasally with 100 50% lethal doses (=100 LD₅₀) of CSFV strain Brescia 456610 (Terpstra and Wensvoort, 1988. Vet. Microbiol. 16:123-128) four weeks after vaccination. Viral contents of the vaccine inaculum were determined by titration of a sample taken after return from the stable. The pigs were euthanised 7 weeks after challenge.

[0137] Clinical observation

[0138] The pigs were checked daily by the animal technicians, abnormal findings were recorded and if necessary the supervising veterinarian was called. Each group was observed at least 15 minutes per day before and during feeding and cleansing of the stable. A reduction in food uptake of the group or an individual animal was noted. Body-temperatures were recorded during several days before and up to 20 days after challenge.

[0139] Blood analysis after challenge

[0140] EDTA-blood samples were collected on days −1, 2, 6, 9, 12 and 15 after challenge to monitor changes of leukocyte and trombocyte numbers in the blood. A decrease in the number of leukocytes (leucopenia) and thrombocytes (thrombocytopenia) is one of the typical signs of CSF. Normal cell counts for white blood cells and thrombocytes in conventional swine range between 11-23 10⁹/l and 320-720 10⁹/l, respectively. Both ranges mentioned vary in each pig. The blood cell analyses were performed with a Medonic CA 570 coulter counter. Leucopenia and thrombocytopenia were defined as cell/platelets counts considerably lower than the minimum number mentioned above, preferably for more than one day.

[0141] Virus isolation and viral antigen detection

[0142] Virus isolation: Peripheral blood leukocytes were extracted from EDTA-blood samples taken on day −1, 2, 6, 9, 12 and 15 after challenge to monitor viraemia. The samples were stored at −70 ° C. The presence of CSFV in the leukocytes was examined as follows. In an M24 plate (Greiner), 300 μl (containing approximately 5×10⁶ cells) of a swine kidney cell (SK6) suspension was added to each well and cultured at 37° C and 5% CO₂ in a humid chamber for 24 h. After 24 h, the medium was removed and 300 μl of an undiluted freeze/thawed leukocyte sample was added per well. After one hour of incubation at 37° C. and 5% CO₂, the sample was removed. The monolayer was then washed by adding and removing 400 μl of culture medium (Eagle basal medium). Subsequently, 800 μl of culture medium (Eagle basal medium with 5% foetal bovine serum (FBS), free of pestivirus antibodies, and 1% of an antibiotic stock ( containing ; glutamine (0.3 mg ml⁻¹), penicillin (200 units ml⁻¹), streptomycin (0.2 mg ml⁻¹) and mycostatin (100 U ml⁻¹.)) was added per well. After four days, the monolayers were washed in 10% NaCl solution, dried for 1 h at 80° C., incubated with a buffered solution containing CSFV specific conjugated antibodies, washed and stained. The monolayers were read microscopically for stained cells. Results were expressed as positive or negative for virus.

[0143] IFT: At post-mortem, tissue samples were collected from tonsil, spleen, kidney, and ileum, and were tested by direct immunofluorescent technique (Ressang and De Boer, 1967. Tijdschrift voor Diergeneeskunde 92:567-586) for the presence of viral antigen. Cryostat sections (4 μm thick, two per organ) from these tissue samples were fixed and incubated with a polyclonal swine anti-pestivirus FITC-conjugated serum. After washing, the sections were read under a fluorescence microscope. Results were expressed as positive (=fluorescence) or negative (=no fluorescence).

[0144] Serological response

[0145] Serum blood samples of all pigs except the controls were collected at one week intervals after challenge during 6 weeks Samples were stored at −20° C. and assayed in a CSFV specific (Terpstra and Wensvoort. 1984. Vet. Microbiol. 33:113-120) virus neutralisation test (NPLA), in the Ceditest ELISA for detecting CSFV specific antibodies against E2 (Colijn et al., 1997. Vet. Microbiol. 59:15-25), and in a Ceditest ELISA for the detection of antibodies against E^(rns) (de Smit et al., in prep).

[0146] CSFV specific neutralising antibody titers in serum were determined in a microtiter system. Serial twofold dilutions of serum were mixed with an equal volume of a CSFV (strain Brescia) suspension which contained 30-300 TCID₅₀. After incubation for 1 hour at 37° C. in a CO₂-incubator approximately 25,000 PK-15 cells per well were added. After four days, the microtiter plates were treated as mentioned above and read microscopically. The CSFV neutralising titer was expressed as the reciprocal of the highest dilution that neutralised all viruses.

[0147] The CSFV E2-ELISA was performed according to the instructions of the manufacturer (Colijn et al., 1997. ibid.). The CSFV E^(rns)-ELISA was performed as follows. Test sera (30 μl) are pre-incubated with CSFV E^(rns)-antigen (70 μl of a working dilution of baculovirus expressed E^(rns) of CSFV strain Brescia) in a 96-wells non-coated microtiter plate containing 45 μl of ELISA buffer for 30 min at 37° C. Thereafter 50 μl of this pre-incubation mix is added to a microtliter plate coated with the E^(rns)-specific monoclonal antibody 137.5, and containing 50 μl of a working solution of the horseradish peroxidase conjugated E^(rns)-specific monoclonal antibody 140.1.1. The plates are incubated for 1 h at 37° C., washed six times with 200 μl of washing solution, and incubated for 30 min at room temperature with 100 μl of a ready-to-use chromogen(3,3′, 5,5′-tetramethylbenzidine)/substrate solution. The color reaction is stopped by adding 100 μl of a 0.5 M H₂SO₄ solution, and the optical density was measured at 450 nm using an Easy Reader spectrophotometer (SLT Vienna).

[0148] Results

[0149] Clinical observation, viral antigen detection, leukocyte/trombocyte counts

[0150] After vaccination none of the animals developed clinical signs or fever (Table 6). Both group A and B pigs developed a mild fever (40° C.<T<41° C.) for three days, starting 3 days after challenge. None of the vaccinated pigs, either in group A (Flc23) or B (Flc22) developed leucopenia or thrombocytopenia (Table 6), although six days after challenge a slight drop in the trombocyte count and leukocyte count was observed for most of the pigs. In both groups A and B, no virus was detected in the leukocytes. Moreover, the organs of all pigs were IFT-negative at the end of the experiment, indicating the absence of persistent infections.

[0151] Serological response

[0152] After vaccination of the pigs in group A (Flc23) and group B (Flc22), no CSFV-specific antibodies were detected with the E2-ELISA (Table 7) and the E^(rns) ELISA (Table 8). This finding was consistent with the NPLA results: all vaccinated pigs remained negative for neutralising antibodies against CSFV (Table 9).

[0153] After challenge inoculation, maximum inhibition percentages were observed in the E2-ELISA in all inoculated pigs. Also, all four pigs seroconverted in the E^(rns) ELISA. In the neutralising antibody assays, all inoculated pigs showed high titers against CSFV. These results clearly show that both Flc22 and Flc23 vaccines protect against a lethal challenge of virulent Brescia, and can be discriminated from infected animals by CSFV specific E^(rns)-ELISA. TABLE 1 IPMA on SK6 monolayers transfected with E^(rns) expression plasmids harbouring the nucleotide sequence of the autoprotease and structural genes (N^(pro) -C-recombinant E^(rns)-E1-E2) E^(rns) E2 plasmid Deletion* C5 140.1 R 716 137.5 b3 b4 pPRK83 None + + + + + + pPRKc49 436 to 488 + + + + + + pPRKc50 422 to 488 − − − − + + pPRKc51 422 to 436 − − − − + + pPRKc48 272 to 488 − − − − + +

[0154] Table 2A IPMA reactivity of the SK6c26 and SK6 cells with CSFV E^(rns) antibodies CSFV antibodies Cells Mab C5 Mab 140.1 Mab 137.5 R 716 SK6c26 + + + + SK6 − − − − Table 2B. Comparison of E^(rns) of SK6c26 and SK6 infected cells with Flc2 RNase activity Cells ng E^(rns) · cm^(−2 a) (A₂₆₀ · min⁻¹ · mg⁻¹) ^(b) Dimerization ^(c) SK6c26 10 130 + SK6 <0.1 0 − SK6 Flc2 30 171 + infected

[0155] TABLE 3 Neutralization of CSF viruses by antibodies Virus neutralizing reduction (log TCID₅₀/ml) with serum ^(a) 716 (directed 539 (directed Virus against E^(rns)) ^(b) against E2) ^(c) Flc2 −3.0 −1.75 Flc22 −3.0 −1.75 Flc23 −3.25 −1.0

[0156] TABLE 4A Reactivity of SK6b2 and SK6 cells with CSFV E2 Mabs Reactivity of CSFV antibodies in IPMA Cells b3 b8 b6 SK6b2 + + + SK6 − − −

[0157] TABLE 4B Characterization of the SK6b2 cell line Cells Dimerization ^(a) ng E2 · cm^(−2 b) SK6b2 + 115 SK6 − 0 SK6 Flc2 + 38 infected

[0158] TABLE 5 Characterization of recombinant E2 viruses on SK6 cells Infectious virus IPMA reactivity on SK6 recovered ^(a) cells SK6b2 SK6 Virus C5 b3 b6 cells cells Flc2 + + + + + Flc4 (deletion B/C + + − + − domains of E2) Flc47 (deletion E2) + − − + −

[0159] TABLE 6 Results of virus isolation, cytopenia and fever after challenge with CSFV # days pig with Group no. fever^(a) Viremia IFT Cytopenia^(b) death A 469 3 − − − − Flc23 476 5 − − − − B 477 5 − − − − Flc22 478 6 − − − −

[0160] TABLE 7 Results of the Ceditest® ELISA for the detection of CSFV-E2 antibodies^(a) days post challenge ′ 100 A. 469 0 0 27 34 17 61 100 100 476 0 0 0 0 18 97 100 100 100 B 477 0 0 11 17 32 93 100 100 100 478 0 0 15 24 34 51 100 100 100

[0161] TABLE 8 Results of the Ceditest® ELISA for the detection of CSFV-E^(rns) antibodies^(a) Animal days post challenge Group no. −28 −15 −1 6 12 19 27 33 49 A. FLc23 469 17 29 26 22 76 80 81 74 83 476 15 28 25 14 70 76 81 69 79 B FLc22 477 13 30 13 20 70 54 49 50 62 478 12 34 35 22 68 84 81 87 92

[0162] a) The Ceditest® E^(rns)-ELISA specifically detects antibodies against envelope protein E^(rns) of CSFV. The test results are expressed as the percentage inhibition of a standard signal; <50% is negative, ≧50% is positive TABLE 9 Results of the NPLA for the detection of CSFV Brescia-specific neutralizing antibodies Animal Days post challenge Group no −28 −21 −15 −9 −1 6 12 19 27 33 49 A 469 <10 <10 <10 <10 15 80 >128 >128 >128 >128 7680 Flc23 0 0 0 0 476 <10 <10 <10 <10 <10 80 >128 >128 >128 >128 7680 0 0 0 0 B 477 <10 <10 <10 <10 10 80 >128 >128 >128 >128 >20480 Flc22 0 0 0 0 478 <10 <10 <10 <10 <10 480 >128 >128 >128 >128 7680 0 0 0 0

LEGENDS

[0163]FIG. 1. Schematic representation of E^(rns) of CSFV strain C (top) and overview of E^(rns) plasmids (bottom). Domains of RNase activity are shown by closed bars. Positions of cysteines are indicated with black dots.

[0164]^(a). Positions of the deletions or point mutations with respect to the amino acid sequence of the open reading frame (ORF) of CSFV strain C (Moormann et.al., J. Virol. 1996, 70: 763-770).

[0165]^(b). Cysteine-to-serine mutations are depicted with white dots.

[0166]^(c). The recombinant E^(rns) in these plasmids do not harbor a C-terminal HA tag.

[0167] NA: not available.

[0168]FIG. 2. Schematic representation of the construction of the full-length DNA copies pPRKflc23 (A) and pPRKflc22 (B) harbouring E^(rns) deletions: The amino acid sequence numbering is of the open reading frame of the CSFV strain C (Moormann et.al. 1996, J. Virol., 70: 763-770). PCR primers are indicated with solid lines and designated: p(number). N^(pro), autoprotease; C, core protein; E^(rns), E1 and E2 envelope proteins; 5′, 5′ non-coding region; 3′, 3′ non-coding region. Amp, ampicillin resistance gene; CIP, calf intestinal phosphatase; Kan, kanamycin resistance gene; ORF: open reading frame; PNK, polynucleotide kinase; PhCMV, promoter-enhancer sequence of the immediate early gene of human cytomegalovirus; T7, bacteriophage T7 promotor. pPRKflc2 is the wild-type full-length cDNA copy of the CSFV strain C. (B) Plasmid pPRKc129 was the template for the first PCR of E^(rns). The Nar I site of this PCR product and the Cla I site of the hemagglutinin (HA) epitope have compatible ends. These two PCR fragments were inserted into the Bgl II/Sal I digested vector pPRKc16 via a three point ligation. See text for detailed information on the construction of the full-length DNA copies and the primer sequences.

[0169]FIG. 3 Characterization of recombinant viruses.

[0170]^(a). Positions of cysteines are indicated with black dots, cysteine-to-serine mutations are depicted with white dots.

[0171]^(b). Positions of the deletions or mutations with respect of the amino acid sequence of CSFV strain C (Moormann et.al., J. Virol. 1996, 70: 763-770).

[0172]^(c). Supernatants from SK6c26 infected cells were used for infection of SK6 and SK6c26 cells. The cells were immunostained with E^(rns) specific antibodies (R716 and C5) or an E2 specific Mab (b3) and were scored as positive(+) or negative (−).

[0173]^(d). Viruses are considered to be infectious virus if supernatant of the infected cells can infect SK6 or SK6b26 cells. Spread of virus via cell-to-cell spread and spread of virus due to division of cells is not considered as infectious virus.

[0174]FIG. 4 RT-PCR of SK6c26 cells infected with Flc22, Flc23 and Flc2 with primers flanking E^(rns) and E2 . (−) negative control: mock infected SK6c26 cells; M: 200 bp marker.

[0175]FIG. 5 Growth kinetics of the recombinant CSFV viruses Flc22, Flc23 and the wild type virus Flc2. Subconfluent monolayers of SK6c26 cells were infected at a multiplicity of 0.1. Viruses were adsorbed for 1.5 hr. Virus titers of the cell lysates and supernatant at various time points were determined by end point dilution on SK6c26cells

[0176]FIG. 6 E^(rns) amino acid sequence of the recombinant Flc22, Flc23 and the wild type strain Flc2, : indicates position of deletion

[0177]FIG. 7. Schematic representation of pPRKflc23 harbouring the HA epitope, a non-pestivirus sequence. The HA epitope is flanked by the 5 utmost N-terminal a.a. and 6 utmost C-terminal a.a. of E^(rns).

[0178]FIG. 8 Schematic representation of the construction of the full-length DNA copies pPRKflc4 (a) and pPRKflc47 (b).The amino acid sequence numbering is of the open reading frame of the CSFV strain C (Moormann et.al. 1996, J. Virol.). PCR primers are indicated with solid lines and designated: p(number). N^(pro), autoprotease; C, core protein; E^(rns), E1 and E2 envelope proteins; p7: p7 protein, NS: nonstructural protein, 5′, 5′ non-coding region; 3′, 3′ non-coding region, Amp; ampicillin resistance, Kan: kanamycin resistance. pPRKflc2 is the wild-type full-length DNA copy of the CSFV strain C. (a) The E2 gene of plasmid pPAB16 was inserted in plasmid pPRKc129 by NgoMI/DglII digestion. (b) pPRKflc2 was the template for PCR amplification with primers p1195 and p403. See text for detailed information on the construction of the full-length DNA copies and the primers sequences. 

What is claimed is:
 1. A recombinant nucleic acid derived from a pestivirus, said recombinant nucleic acid comprising: a nucleic acid having a functional deletion in a fragment encoding at least one pestiviral protein or substantial part thereof related to viral spread, said nucleic acid allowing for RNA replication in a suitable cell and encoding at least one structural protein or at least one immunodominant part thereof.
 2. The recombinant nucleic acid of claim 1 wherein said nucleic acid is RNA.
 3. The recombinant nucleic acid of claim 1 or claim 2 wherein said functional deletion is in a fragment encoding an envelope protein.
 4. The recombinant nucleic acid of any one of claims 1 to 3 wherein said functional deletion comprises an immunodominant part of said protein.
 5. The recombinant nucleic acid of any one of claims 1 to 4 wherein said structural protein is a functional envelope protein, or at least one immunodominant part thereof.
 6. The recombinant nucleic acid of any one of claims 1 to 5 additionally comprising a non-pestivirus nucleic acid fragment.
 7. The recombinant nucleic acid of claim 6 wherein said non-pestivirus fragment is derived from a pathogen or a cytokine.
 8. The recombinant nucleic acid of any one of claims 1 to 7 wherein the suitable cell comprises a nucleic acid construct encoding at least said pestiviral protein or substantial part thereof related to viral spread.
 9. A cell comprising a nucleic acid construct encoding at least one pestiviral protein or substantial part thereof related to viral spread and allowing packaging said pestiviral protein or substantial part thereof in a pestivirus-like particle.
 10. The cell of claim 8 wherein said pestiviral protein or substantial part thereof related to viral spread is stably expressed.
 11. A process for obtaining a pestivirus-like particle comprising: transfecting a cell, said cell comprising a nucleic acid construct encoding at least one pestiviral protein or substantial part thereof related to viral spread and allowing packaging said pestiviral protein or substantial part thereof in a pestivirus-like particle with the recombinant nucleic acid of any one of claims 1 to 8, allowing said nucleic acid to replicate in said cell, allowing replicate nucleic acid to be part of a particle comprising at least pestiviral protein or part thereof derived from said cell, and harvesting said pestivirus-like particle.
 12. The process according to claim 11 wherein the pestiviral protein or substantial part thereof related to viral spread is stably expressed.
 13. A pestivirus-like particle obtained by the method according to claim
 11. 14. A pestivirus-like particle comprising the nucleic acid of any one of claims 1 to
 8. 15. A method for obtaining a non-spreading pestivirus vaccine, said method comprising: obtaining a multitude of pestivirus-like particles by a method according to claim 11, and preparing a suspension of said multitude of pestivirus-like particles in a suitable diluent.
 16. The method according to claim 14 further comprising: combining said suspension with an adjuvant.
 17. A non-spreading-pestivirus vaccine obtained by the method according to claim 15 or claim
 16. 18. A vaccine comprising the nucleic acid of any one of claims 1 to 8 or the pestivirus-like particle of claim 13 and a diluent.
 19. The vaccine of claim 18 further comprising an adjuvant.
 20. The vaccine of claim 18 or claim 19 wherein said nucleic acid is derived from a pestivirus vaccine strain.
 21. The vaccine of claim 18 or claim 19 wherein said nucleic acid is derived from a classical swine fever virus.
 22. The vaccine of claim 18 or claim 19 wherein said nucleic acid is derived from a bovine viral diarrhoea virus.
 23. The vaccine of any one of claims 16 to 19 wherein said nucleic acid is derived from a Border disease virus.
 24. A method for controlling and/or eradicating a pestivirus infection in a group of animals, said method comprising: vaccinating at least one animal of said group of animals with the vaccine of any one of claims 17 to
 23. 25. The method according to claim 24 further comprising: testing an animal vaccinated with the vaccine for the presence of antibodies specific for a wild-type pestivirus.
 26. An animal vaccinated with the vaccine of any one of claims 17 to
 23. 27. The vaccine of claim 18 or claim 19 wherein said nucleic acid is derived from a C-strain pestivirus. 